![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.23997s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 354aa MW: 38956.1 Da PI: 4.5057 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.9 | 1.7e-08 | 291 | 338 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +k +e+Le+++++++ p+ + + + ++L+ ++V WF +Ra Bostr.23997s0022.1.p 291 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEEKRA 338 567899*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.378 | 283 | 343 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-8 | 288 | 348 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.3E-4 | 289 | 347 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.7E-6 | 291 | 338 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-8 | 291 | 350 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.36E-5 | 294 | 338 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MAVALSSSSG VVSHLYPPLF SSSSGLSVNR VLFRNGHAST FSVAIPFHSP SRSVLVFARG 60 KNRNGFASSP SSSSPKRNKK KSFEGDDNGG GEEEDDPFEA LFNLLEEDLK NDKSSIDDEE 120 ISEEELDALA DELARALGGG DDDDGIDLFG SATGDVVDDG DDGDDEDEDE DDDDDSEEDE 180 RPTKLKNWQL RRLAYALKAG RRKTSIKNLA AEVCLDRAYV LELLRDPPPK LLMLSATLPD 240 EKPPVAAPEN SSPDPNPVES SLAEDIVVEP EKKIKDEAVH VMQQRWSAQK RVKKAHIETL 300 EKVYRRSKRP TNAVVSSIVQ VTNLPRKRVL KWFEEKRAED GVPEKRAPYQ APV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT002017 | 0.0 | BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds. | |||
GenBank | BT008743 | 0.0 | BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289083.1 | 1e-177 | hypothetical protein CARUB_v10002492mg | ||||
Swissprot | Q8H0V5 | 1e-161 | OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
TrEMBL | R0FIW4 | 1e-176 | R0FIW4_9BRAS; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__1093__AT5G11270.1 | 1e-176 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12077 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11270.1 | 1e-114 | overexpressor of cationic peroxidase 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.23997s0022.1.p |